IIT Publications List

Publications
2023
Murphy D., Salataj E., Di Giammartino D.C., Rodriguez-Hernaez J., Kloetgen A., Garg V., Char E., Uyehara C.M., Ee L.-S., Lee U.J., et al.
3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages
Nature Structural and Molecular Biology
2022
He Y., Kim I., Bian J., Polyzos A., Di Giammartino D.C.
A Knock-In Mouse Model of Thymoma With the GTF2I L424H Mutation
journal of thoracic oncology
2022
Di Giammartino D.C., Polyzos A., Apostolou E.
Assessing Specific Networks of Chromatin Interactions with HiChIP
Methods of Molecular Biology
2021
Pelham-Webb B., Polyzos A., Wojenski L., Kloetgen A., Li J., Di Giammartino D.C., Sakellaropoulos T., Tsirigos A., Core L., Apostolou E.
H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization
Molecular Cell, vol. 81, (no. 8), pp. 1732-1748.e8
2021
Doane A.S., Chu C.-S., Di Giammartino D.C., Rivas M.A., Hellmuth J.C., Jiang Y., Yusufova N., Alonso A., Roeder R.G., Apostolou E., et al.
OCT2 pre-positioning facilitates cell fate transition and chromatin architecture changes in humoral immunity
Nature Immunology, vol. 22, (no. 10), pp. 1327-1340
2020
Di Giammartino D.C., Polyzos A., Apostolou E.
Transcription factors: building hubs in the 3D space
Cell Cycle, vol. 19, (no. 19), pp. 2395-2410
2019
Lhoumaud P., Sethia G., Izzo F., Sakellaropoulos T., Snetkova V., Vidal S., Badri S., Cornwell M., Di Giammartino D.C., Kim K.-T., et al.
EpiMethylTag: Simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation
Genome Biology, vol. 20, (no. 1)
2019
Di Giammartino D.C., Kloetgen A., Polyzos A., Liu Y., Kim D., Murphy D., Abuhashem A., Cavaliere P., Aronson B., Shah V., et al.
KLF4 is involved in the organization and regulation of pluripotency-associated three-dimensional enhancer networks
Nature Cell Biology, vol. 21, (no. 10), pp. 1179-1190
2019
Seruggia D., Oti M., Tripathi P., Canver M.C., LeBlanc L., Di Giammartino D.C., Bullen M.J., Nefzger C.M., Sun Y.B.Y., Farouni R., et al.
TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via the MYC Regulatory Network
Molecular Cell, vol. 74, (no. 6), pp. 1148-1163.e7
2017
Liu Y., Pelham-Webb B., Di Giammartino D.C., Li J., Kim D., Kita K., Saiz N., Garg V., Doane A., Giannakakou P., et al.
Widespread Mitotic Bookmarking by Histone Marks and Transcription Factors in Pluripotent Stem Cells
Cell Reports, vol. 19, (no. 7), pp. 1283-1293